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Related entries of code: 5im3
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
No similar entries are found!
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1h7aRCSB PDB    PDBbindDTP
5ey4RCSB PDB    PDBbindDTP
5olkRCSB PDB    PDBbindDTP
6jonRCSB PDB    PDBbindDTP
6iplRCSB PDB    PDBbindDTP
6iphRCSB PDB    PDBbindDTP

Entry Information
PDB ID5im3
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Nameclass I ribonucleotide reductase from Pseudomonas aeruginosa
Ligand NameDTP
EC.Number E.C.1.17.4.1
Resolution 2.3(Å)
Affinity (Kd/Ki/IC50)Kd~1.5uM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Structure Vol. 24: pp. 906-917
Ligand Properties
Formula C10H19N5O12P3
Molecular Weight 494.205
Exact Mass 494.024
No. of atoms 49
No. of bonds 51
Polar Surface Area 309.15
LOGP Value -5.09      (Computed with XLOGP3)
-1.33      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 11
No. of Rotatable Bonds: 8
No. of Nitrogen and Oxygen Atoms: 17
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9I4I1  
Entrez Gene IDNCBI Entrez Gene ID: 877716  
ASDInformation of known allosteric effects of PDB entries

 
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