Browse entries in the PDBbind-CN Database

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Related entries of code: 5iz8
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5izaRCSB PDB    PDBbind354aa, >5IZA_1|Chain... at 100%
5iz9RCSB PDB    PDBbind354aa, >5IZ9_1|Chain... at 100%
5iz6RCSB PDB    PDBbind354aa, >5IZ6_1|Chain... at 100%
5b6gRCSB PDB    PDBbind354aa, >5B6G_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID5iz8
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameAdenomatous polyposis coli protein
Ligand Namemer-9
EC.Number E.C.-.-.-.-
Resolution 3.06(Å)
Affinity (Kd/Ki/IC50)Ki=2.41uM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) Nat. Chem. Biol. Vol. 13: pp. 994-1001
Ligand Properties
Formula C28H46N8O12
Molecular Weight 686.711
Exact Mass 686.324
No. of atoms 94
No. of bonds 93
Polar Surface Area 321.39
LOGP Value -0.21      (Computed with XLOGP3)
-0.60      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 8
No. of Hydrogen Bond Acceptors: 12
No. of Rotatable Bonds: 26
No. of Nitrogen and Oxygen Atoms: 20
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P25054  
Entrez Gene IDNCBI Entrez Gene ID: 324  
ASDInformation of known allosteric effects of PDB entries

 
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