Browse entries in the PDBbind-CN Database

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Related entries of code: 5izl
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5izkRCSB PDB    PDBbind616aa, >5IZK_1|Chains... *
5izmRCSB PDB    PDBbind616aa, >5IZM_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
4dcvRCSB PDB    PDBbindGCP
4p4sRCSB PDB    PDBbindGCP

Entry Information
PDB ID5izl
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameSelenocysteine-specific elongation factor, human eEFSec
Ligand NameGCP
EC.Number E.C.-.-.-.-
Resolution 2.72(Å)
Affinity (Kd/Ki/IC50)Kd=1.85uM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Nat Commun Vol. 7: pp. 12941-12941
Ligand Properties
Formula C11H22N5O13P3
Molecular Weight 525.239
Exact Mass 525.043
No. of atoms 54
No. of bonds 56
Polar Surface Area 341.37
LOGP Value -5.75      (Computed with XLOGP3)
-3.54      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 11
No. of Rotatable Bonds: 9
No. of Nitrogen and Oxygen Atoms: 18
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P57772  
Entrez Gene IDNCBI Entrez Gene ID: 60678  
ASDInformation of known allosteric effects of PDB entries

 
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