Browse entries in the PDBbind-CN Database

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Related entries of code: 5l3e
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2xafRCSB PDB    PDBbind482aa, >2XAF_2|Chain... *
2xagRCSB PDB    PDBbind482aa, >2XAG_2|Chain... at 100%
2xahRCSB PDB    PDBbind482aa, >2XAH_2|Chain... at 100%
2xajRCSB PDB    PDBbind482aa, >2XAJ_2|Chain... at 100%
2xaqRCSB PDB    PDBbind482aa, >2XAQ_2|Chain... at 100%
2xasRCSB PDB    PDBbind482aa, >2XAS_2|Chain... at 100%
3zmtRCSB PDB    PDBbind482aa, >3ZMT_2|Chain... at 100%
3zmuRCSB PDB    PDBbind482aa, >3ZMU_2|Chain... at 100%
3zmvRCSB PDB    PDBbind482aa, >3ZMV_2|Chain... at 100%
3zmzRCSB PDB    PDBbind482aa, >3ZMZ_2|Chain... at 100%
3zn0RCSB PDB    PDBbind482aa, >3ZN0_2|Chain... at 100%
3zn1RCSB PDB    PDBbind482aa, >3ZN1_2|Chain... at 100%
4uv8RCSB PDB    PDBbind482aa, >4UV8_2|Chain... at 100%
4uv9RCSB PDB    PDBbind482aa, >4UV9_2|Chain... at 100%
4uvaRCSB PDB    PDBbind482aa, >4UVA_2|Chain... at 100%
4uvbRCSB PDB    PDBbind482aa, >4UVB_2|Chain... at 100%
4uvcRCSB PDB    PDBbind482aa, >4UVC_2|Chain... at 100%
5lbqRCSB PDB    PDBbind178aa, >5LBQ_2|Chain... at 100%
5lgnRCSB PDB    PDBbind133aa, >5LGN_2|Chain... at 100%
5lgtRCSB PDB    PDBbind178aa, >5LGT_2|Chain... at 100%
5lguRCSB PDB    PDBbind178aa, >5LGU_2|Chain... at 100%
5lhgRCSB PDB    PDBbind482aa, >5LHG_2|Chain... at 100%
5lhhRCSB PDB    PDBbind482aa, >5LHH_2|Chain... at 100%
5lhiRCSB PDB    PDBbind482aa, >5LHI_2|Chain... at 100%
5yjbRCSB PDB    PDBbind140aa, >5YJB_2|Chain... at 95%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
3mo0RCSB PDB    PDBbindE11

Entry Information
PDB ID5l3e
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameLSD1-CoREST1 complex
Ligand NameE11
EC.Number E.C.1.-.-.-
Resolution 2.8(Å)
Affinity (Kd/Ki/IC50)Kd=660nM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Sci Adv Vol. 2: pp. e1601017-e1601017
Ligand Properties
Formula C27H40N6O2
Molecular Weight 480.646
Exact Mass 480.321
No. of atoms 75
No. of bonds 78
Polar Surface Area 77.18
LOGP Value 5.15      (Computed with XLOGP3)
2.97      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 11
No. of Nitrogen and Oxygen Atoms: 8
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O60341  Q9UKL0  
Entrez Gene IDNCBI Entrez Gene ID: 23028  23186  
ASDInformation of known allosteric effects of PDB entries

 
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