Browse entries in the PDBbind-CN Database

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Related entries of code: 5l6i
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1cmxRCSB PDB    PDBbind76aa, >1CMX_2|Chains... at 100%
1xd3RCSB PDB    PDBbind75aa, >1XD3_2|Chains... at 100%
2hd5RCSB PDB    PDBbind76aa, >2HD5_2|Chain... at 100%
2xbbRCSB PDB    PDBbind76aa, >2XBB_2|Chains... at 100%
2y5bRCSB PDB    PDBbind152aa, >2Y5B_2|Chains... at 99%
3dvgRCSB PDB    PDBbind79aa, >3DVG_4|Chain... at 94%
3dvnRCSB PDB    PDBbind79aa, >3DVN_4|Chains... at 94%
3kw5RCSB PDB    PDBbind75aa, >3KW5_2|Chain... at 100%
3olmRCSB PDB    PDBbind79aa, >3OLM_2|Chain... at 92%
3rulRCSB PDB    PDBbind79aa, >3RUL_1|Chains... at 94%
3znzRCSB PDB    PDBbind152aa, >3ZNZ_2|Chain... at 100%
4i6lRCSB PDB    PDBbind76aa, >4I6L_2|Chain... at 90%
4m0wRCSB PDB    PDBbind76aa, >4M0W_2|Chain... at 100%
5e6jRCSB PDB    PDBbind76aa, >5E6J_2|Chains... at 97%
5gviRCSB PDB    PDBbind72aa, >5GVI_3|Chain... at 100%
5l6hRCSB PDB    PDBbind76aa, >5L6H_2|Chains... at 96%
5l6jRCSB PDB    PDBbind76aa, >5L6J_2|Chains... at 96%
5lrwRCSB PDB    PDBbind76aa, >5LRW_2|Chains... at 98%
5ohpRCSB PDB    PDBbind76aa, >5OHP_2|Chains... at 100%
5ydrRCSB PDB    PDBbind75aa, >5YDR_1|Chains... at 97%
5yijRCSB PDB    PDBbind78aa, >5YIJ_2|Chains... at 97%
6isuRCSB PDB    PDBbind76aa, >6ISU_3|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
3gznRCSB PDB    PDBbindB39

Entry Information
PDB ID5l6i
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Nameubiquitin-activating enzyme (Uba1)
Ligand NameB39
EC.Number E.C.-.-.-.-
Resolution 2.76(Å)
Affinity (Kd/Ki/IC50)IC50=45uM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) Structure Vol. 25: pp. 1120-1129.e3
Ligand Properties
Formula C21H25N5O4S
Molecular Weight 443.519
Exact Mass 443.163
No. of atoms 56
No. of bonds 60
Polar Surface Area 140.74
LOGP Value 1.70      (Computed with XLOGP3)
3.92      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 7
No. of Nitrogen and Oxygen Atoms: 9
No. of Rings: 5
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P05759  P22515  
Entrez Gene IDNCBI Entrez Gene ID: 850864  853670  
ASDInformation of known allosteric effects of PDB entries

 
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