Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 5lj0
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
6s57RCSB PDB    PDBbind130aa, >6S57_1|Chain... at 100%
6s56RCSB PDB    PDBbind130aa, >6S56_1|Chain... at 100%
6s55RCSB PDB    PDBbind130aa, >6S55_1|Chain... at 100%
4qsuRCSB PDB    PDBbind130aa, >4QSU_1|Chain... *
4qsvRCSB PDB    PDBbind130aa, >4QSV_1|Chain... at 100%
4qswRCSB PDB    PDBbind130aa, >4QSW_1|Chain... at 100%
4qsxRCSB PDB    PDBbind130aa, >4QSX_1|Chain... at 100%
4tt2RCSB PDB    PDBbind130aa, >4TT2_1|Chain... at 100%
4tteRCSB PDB    PDBbind130aa, >4TTE_1|Chain... at 100%
4tu4RCSB PDB    PDBbind130aa, >4TU4_1|Chain... at 100%
4tylRCSB PDB    PDBbind130aa, >4TYL_1|Chain... at 100%
4tz2RCSB PDB    PDBbind130aa, >4TZ2_1|Chain... at 100%
4tz8RCSB PDB    PDBbind130aa, >4TZ8_1|Chain... at 100%
5a5oRCSB PDB    PDBbind130aa, >5A5O_1|Chain... at 100%
5a5pRCSB PDB    PDBbind130aa, >5A5P_1|Chain... at 100%
5a5qRCSB PDB    PDBbind130aa, >5A5Q_1|Chain... at 100%
5a5rRCSB PDB    PDBbind130aa, >5A5R_1|Chain... at 100%
5a81RCSB PDB    PDBbind130aa, >5A81_1|Chain... at 100%
5a82RCSB PDB    PDBbind130aa, >5A82_1|Chain... at 100%
5a83RCSB PDB    PDBbind130aa, >5A83_1|Chain... at 100%
6hdnRCSB PDB    PDBbind130aa, >6HDN_1|Chain... at 100%
6hdoRCSB PDB    PDBbind130aa, >6HDO_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5lj1RCSB PDB    PDBbind6XX

Entry Information
PDB ID5lj0
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameATPase family AAA domain-containing protein 2, human ATAD2 bromodomain
Ligand Name6XX
EC.Number E.C.3.6.1.3
Resolution 1.82(Å)
Affinity (Kd/Ki/IC50)IC50=10nM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Angew.Chem.Int.Ed.Engl. Vol. 55: pp. 11382-11386
Ligand Properties
Formula C28H36F2N5O3
Molecular Weight 528.614
Exact Mass 528.279
No. of atoms 74
No. of bonds 78
Polar Surface Area 105.74
LOGP Value 3.25      (Computed with XLOGP3)
4.83      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 7
No. of Nitrogen and Oxygen Atoms: 8
No. of Rings: 5
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q6PL18  
Entrez Gene IDNCBI Entrez Gene ID: 29028  
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com