Browse entries in the PDBbind-CN Database

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Related entries of code: 5niy
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
6cvdRCSB PDB    PDBbind303aa, >6CVD_1|Chains... at 99%
6dlxRCSB PDB    PDBbind303aa, >6DLX_1|Chains... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1ryhRCSB PDB    PDBbindGNP
2wicRCSB PDB    PDBbindGNP
2wjiRCSB PDB    PDBbindGNP
3bb1RCSB PDB    PDBbindGNP
3ftqRCSB PDB    PDBbindGNP
3q72RCSB PDB    PDBbindGNP
3q7pRCSB PDB    PDBbindGNP
3q7qRCSB PDB    PDBbindGNP
3zjcRCSB PDB    PDBbindGNP
4idnRCSB PDB    PDBbindGNP
4jybRCSB PDB    PDBbindGNP
5izmRCSB PDB    PDBbindGNP
Entry Information
PDB ID5niy
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameSignal recognition particle-docking protein FtsY
Ligand NameGNP
EC.Number E.C.-.-.-.-
Resolution 1.7(Å)
Affinity (Kd/Ki/IC50)Kd=60uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Structure Vol. 26: pp. 1440-1450.e5
Ligand Properties
Formula C10H21N6O13P3
Molecular Weight 526.227
Exact Mass 526.038
No. of atoms 53
No. of bonds 55
Polar Surface Area 353.4
LOGP Value -5.89      (Computed with XLOGP3)
-3.69      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 11
No. of Rotatable Bonds: 9
No. of Nitrogen and Oxygen Atoms: 19
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P10121  
Entrez Gene IDNCBI Entrez Gene ID: 947978  
ASDInformation of known allosteric effects of PDB entries
 
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