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Related entries of code: 5o4z
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5o58RCSB PDB    PDBbind338aa, >5O58_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID5o4z
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameDHH/DHHA1-type phosphodiesterase TM1595 D80N D154N
Ligand NameA
EC.Number E.C.-.-.-.-
Resolution 1.7(Å)
Affinity (Kd/Ki/IC50)Kd=860nM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) Structure Vol. 25: pp. 1887-1897.e4
Ligand Properties
Formula C20H28N10O13P2
Molecular Weight 678.443
Exact Mass 678.131
No. of atoms 73
No. of bonds 78
Polar Surface Area 374.41
LOGP Value -6.35      (Computed with XLOGP3)
-2.39      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 5
No. of Hydrogen Bond Acceptors: 14
No. of Rotatable Bonds: 12
No. of Nitrogen and Oxygen Atoms: 23
No. of Rings: 6
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9X1T1  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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