Browse entries in the PDBbind-CN Database

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Related entries of code: 5oss
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1oifRCSB PDB    PDBbind468aa, >1OIF_1|Chains... *
1oimRCSB PDB    PDBbind468aa, >1OIM_1|Chains... at 100%
1uz1RCSB PDB    PDBbind468aa, >1UZ1_1|Chains... at 100%
1w3jRCSB PDB    PDBbind468aa, >1W3J_1|Chains... at 100%
2cbuRCSB PDB    PDBbind468aa, >2CBU_1|Chains... at 100%
2cbvRCSB PDB    PDBbind468aa, >2CBV_1|Chains... at 100%
2cesRCSB PDB    PDBbind468aa, >2CES_1|Chains... at 100%
2cetRCSB PDB    PDBbind468aa, >2CET_1|Chains... at 100%
2j75RCSB PDB    PDBbind468aa, >2J75_1|Chains... at 100%
2j77RCSB PDB    PDBbind468aa, >2J77_1|Chains... at 100%
2j78RCSB PDB    PDBbind468aa, >2J78_1|Chains... at 100%
2j79RCSB PDB    PDBbind468aa, >2J79_1|Chains... at 100%
2j7bRCSB PDB    PDBbind468aa, >2J7B_1|Chains... at 100%
2j7dRCSB PDB    PDBbind468aa, >2J7D_1|Chains... at 100%
2j7eRCSB PDB    PDBbind468aa, >2J7E_1|Chains... at 100%
2j7fRCSB PDB    PDBbind468aa, >2J7F_1|Chains... at 100%
2j7gRCSB PDB    PDBbind468aa, >2J7G_1|Chains... at 100%
2j7hRCSB PDB    PDBbind468aa, >2J7H_1|Chains... at 100%
2jalRCSB PDB    PDBbind468aa, >2JAL_1|Chains... at 100%
2vrjRCSB PDB    PDBbind468aa, >2VRJ_1|Chains... at 100%
2wbgRCSB PDB    PDBbind468aa, >2WBG_1|Chains... at 100%
2wc3RCSB PDB    PDBbind468aa, >2WC3_1|Chains... at 100%
2wc4RCSB PDB    PDBbind468aa, >2WC4_1|Chains... at 100%
5n6sRCSB PDB    PDBbind468aa, >5N6S_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5ostRCSB PDB    PDBbindAEZ

Entry Information
PDB ID5oss
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameBeta-glucosidase A
Ligand NameAEZ
EC.Number E.C.3.2.1.21
Resolution 1.7(Å)
Affinity (Kd/Ki/IC50)Kd=28.3uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) J. Am. Chem. Soc. Vol. 140: pp. 5045-5048
Ligand Properties
Formula C8H12N2O4
Molecular Weight 200.192
Exact Mass 200.080
No. of atoms 26
No. of bonds 27
Polar Surface Area 109.6
LOGP Value -2.26      (Computed with XLOGP3)
-1.75      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 5
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q08638  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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