Browse entries in the PDBbind-CN Database

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Related entries of code: 5u5k
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2qxvRCSB PDB    PDBbind361aa, >2QXV_1|Chain... at 100%
3jzgRCSB PDB    PDBbind402aa, >3JZG_1|Chain... at 100%
3jzhRCSB PDB    PDBbind402aa, >3JZH_1|Chain... at 100%
3k27RCSB PDB    PDBbind366aa, >3K27_1|Chain... at 100%
5gsaRCSB PDB    PDBbind367aa, >5GSA_1|Chains... at 99%
5h13RCSB PDB    PDBbind376aa, >5H13_1|Chain... at 97%
5h14RCSB PDB    PDBbind367aa, >5H14_1|Chains... at 99%
5h15RCSB PDB    PDBbind367aa, >5H15_1|Chains... at 99%
5h17RCSB PDB    PDBbind367aa, >5H17_1|Chain... at 99%
5h19RCSB PDB    PDBbind367aa, >5H19_1|Chain... at 99%
5k0mRCSB PDB    PDBbind372aa, >5K0M_1|Chain... at 98%
5ttwRCSB PDB    PDBbind367aa, >5TTW_1|Chains... at 99%
5u5hRCSB PDB    PDBbind367aa, >5U5H_1|Chain... at 99%
5u5tRCSB PDB    PDBbind367aa, >5U5T_1|Chains... at 99%
5u62RCSB PDB    PDBbind367aa, >5U62_1|Chains... at 99%
5u69RCSB PDB    PDBbind369aa, >5U69_1|Chain... at 98%
5u6dRCSB PDB    PDBbind369aa, >5U6D_1|Chain... at 98%
5u8aRCSB PDB    PDBbind369aa, >5U8A_1|Chain... at 98%
5u8fRCSB PDB    PDBbind369aa, >5U8F_1|Chain... at 98%
5wg6RCSB PDB    PDBbind442aa, >5WG6_2|Chains... *
5wukRCSB PDB    PDBbind366aa, >5WUK_1|Chain... at 99%
6sfcRCSB PDB    PDBbind366aa, >6SFC_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5u5k
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NamePolycomb protein EED
Ligand Name7VY
EC.Number E.C.-.-.-.-
Resolution 2.33(Å)
Affinity (Kd/Ki/IC50)IC50=95uM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) J. Med. Chem. Vol. 60: pp. 415-427
Ligand Properties
Formula C13H20NO
Molecular Weight 206.304
Exact Mass 206.154
No. of atoms 35
No. of bonds 36
Polar Surface Area 25.84
LOGP Value 2.47      (Computed with XLOGP3)
2.78      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 0
No. of Rotatable Bonds: 3
No. of Nitrogen and Oxygen Atoms: 2
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O75530  
Entrez Gene IDNCBI Entrez Gene ID: 8726  
ASDInformation of known allosteric effects of PDB entries
 
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