Browse entries in the PDBbind-CN Database

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Related entries of code: 5xpi
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3souRCSB PDB    PDBbind70aa, >3SOU_1|Chains... at 98%
3sowRCSB PDB    PDBbind70aa, >3SOW_1|Chains... at 98%
3t6rRCSB PDB    PDBbind72aa, >3T6R_1|Chains... at 91%
3zvyRCSB PDB    PDBbind72aa, >3ZVY_1|Chains... at 98%
6iiwRCSB PDB    PDBbind68aa, >6IIW_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID5xpi
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameUbiquitin-like with PHD and RING finger domains 1
Ligand Name8C3
EC.Number E.C.-.-.-.-
Resolution 2.2(Å)
Affinity (Kd/Ki/IC50)Kd=5.2uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) SLAS Discov Vol. 23: pp. 930-940
Ligand Properties
Formula C18H26N5O2S
Molecular Weight 376.496
Exact Mass 376.181
No. of atoms 52
No. of bonds 54
Polar Surface Area 101.08
LOGP Value 1.96      (Computed with XLOGP3)
0.84      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 9
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q96T88  
Entrez Gene IDNCBI Entrez Gene ID: 29128  
ASDInformation of known allosteric effects of PDB entries

 
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