Browse entries in the PDBbind-CN Database

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Related entries of code: 5yyb
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5z99RCSB PDB    PDBbind485aa, >5Z99_1|Chain... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID5yyb
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameHd-SatA
Ligand NameNGE
EC.Number E.C.-.-.-.-
Resolution 2.48(Å)
Affinity (Kd/Ki/IC50)Kd=277nM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) J. Biol. Chem. Vol. 293: pp. 20073-20084
Ligand Properties
Formula C11H19NO10
Molecular Weight 325.269
Exact Mass 325.101
No. of atoms 41
No. of bonds 41
Polar Surface Area 197.01
LOGP Value -3.23      (Computed with XLOGP3)
-4.51      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 7
No. of Hydrogen Bond Acceptors: 9
No. of Rotatable Bonds: 12
No. of Nitrogen and Oxygen Atoms: 11
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q7VL18  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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