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Related entries of code: 6ak5
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
6ipmRCSB PDB    PDBbind356aa, >6IPM_1|Chain... at 100%
6iplRCSB PDB    PDBbind356aa, >6IPL_1|Chain... at 100%
6ipkRCSB PDB    PDBbind356aa, >6IPK_1|Chain... at 100%
6ipjRCSB PDB    PDBbind356aa, >6IPJ_1|Chain... at 100%
6ipiRCSB PDB    PDBbind356aa, >6IPI_1|Chain... at 100%
6iphRCSB PDB    PDBbind356aa, >6IPH_1|Chain... at 100%
6ak9RCSB PDB    PDBbind356aa, >6AK9_1|Chain... at 100%
6ak8RCSB PDB    PDBbind356aa, >6AK8_1|Chain... at 100%
6ak6RCSB PDB    PDBbind356aa, >6AK6_1|Chain... at 100%
6aehRCSB PDB    PDBbind356aa, >6AEH_1|Chain... at 100%
6aecRCSB PDB    PDBbind356aa, >6AEC_1|Chain... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1jlrRCSB PDB    PDBbindGTP
2j7wRCSB PDB    PDBbindGTP
2xtnRCSB PDB    PDBbindGTP
3evcRCSB PDB    PDBbindGTP
3evdRCSB PDB    PDBbindGTP
3ffuRCSB PDB    PDBbindGTP
3rsbRCSB PDB    PDBbindGTP
4kaxRCSB PDB    PDBbindGTP
4kvaRCSB PDB    PDBbindGTP
4ncnRCSB PDB    PDBbindGTP
5efcRCSB PDB    PDBbindGTP
5ey0RCSB PDB    PDBbindGTP
5gofRCSB PDB    PDBbindGTP
6j72RCSB PDB    PDBbindGTP
6iaeRCSB PDB    PDBbindGTP
6ia7RCSB PDB    PDBbindGTP
6sgeRCSB PDB    PDBbindGTP

Entry Information
PDB ID6ak5
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameDNA-directed DNA/RNA polymerase mu
Ligand NameGTP
EC.Number E.C.2.7.7.7
Resolution 1.7(Å)
Affinity (Kd/Ki/IC50)Kd=0.75uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) J.Am.Chem.Soc. Vol. 141: pp. 8489-8502
Ligand Properties
Formula C10H20N5O14P3
Molecular Weight 527.212
Exact Mass 527.022
No. of atoms 52
No. of bonds 54
Polar Surface Area 350.6
LOGP Value -5.61      (Computed with XLOGP3)
-3.65      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 11
No. of Rotatable Bonds: 9
No. of Nitrogen and Oxygen Atoms: 19
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9NP87  
Entrez Gene IDNCBI Entrez Gene ID: 27434  
ASDInformation of known allosteric effects of PDB entries

 
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