Browse entries in the PDBbind-CN Database

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Related entries of code: 6bqd
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5i1qRCSB PDB    PDBbind144aa, >5I1Q_1|Chain... at 100%
5i29RCSB PDB    PDBbind144aa, >5I29_1|Chain... at 100%
5mg2RCSB PDB    PDBbind137aa, >5MG2_1|Chain... at 98%
6df4RCSB PDB    PDBbind167aa, >6DF4_1|Chain... *
6df7RCSB PDB    PDBbind167aa, >6DF7_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5i7yRCSB PDB    PDBbind69G
5i88RCSB PDB    PDBbind69G

Entry Information
PDB ID6bqd
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameTranscription initiation factor TFIID subunit 1
Ligand Name69G
EC.Number E.C.2.3.1.48 ;2.7.11.1
Resolution 2.14(Å)
Affinity (Kd/Ki/IC50)IC50=0.41uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) J. Comput. Aided Mol. Des. Vol. 33: pp. 307-330
Ligand Properties
Formula C20H21N3O2
Molecular Weight 335.400
Exact Mass 335.163
No. of atoms 46
No. of bonds 48
Polar Surface Area 58.1
LOGP Value 2.15      (Computed with XLOGP3)
3.27      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P21675  
Entrez Gene IDNCBI Entrez Gene ID: 6872  
ASDInformation of known allosteric effects of PDB entries

 
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