Browse entries in the PDBbind-CN Database

Display Options: Structure:  

Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 6c0u
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1re8RCSB PDB    PDBbind350aa, >1RE8_1|Chain... at 98%
1rejRCSB PDB    PDBbind350aa, >1REJ_1|Chain... at 98%
1rekRCSB PDB    PDBbind350aa, >1REK_1|Chain... at 98%
1szmRCSB PDB    PDBbind350aa, >1SZM_1|Chains... at 98%
3ag9RCSB PDB    PDBbind351aa, >3AG9_1|Chains... at 99%
3aglRCSB PDB    PDBbind351aa, >3AGL_1|Chains... at 100%
3agmRCSB PDB    PDBbind351aa, >3AGM_1|Chain... at 100%
3bwjRCSB PDB    PDBbind350aa, >3BWJ_1|Chain... at 99%
5izfRCSB PDB    PDBbind351aa, >5IZF_1|Chain... at 100%
5izjRCSB PDB    PDBbind351aa, >5IZJ_1|Chains... at 100%
5j5xRCSB PDB    PDBbind351aa, >5J5X_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
6c0tRCSB PDB    PDBbindEE4

Entry Information
PDB ID6c0u
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NamecAMP-dependent protein kinase catalytic subunit alpha
Ligand NameEE4
EC.Number E.C.
Resolution 2.65(Å)
Affinity (Kd/Ki/IC50)IC50=1030nM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) J. Biol. Chem. Vol. 293: pp. 10985-10992
Ligand Properties
Formula C30H28FN5O5
Molecular Weight 557.572
Exact Mass 557.207
No. of atoms 69
No. of bonds 73
Polar Surface Area 134.77
LOGP Value 3.40      (Computed with XLOGP3)
3.93      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 12
No. of Nitrogen and Oxygen Atoms: 10
No. of Rings: 5
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P17612  
Entrez Gene IDNCBI Entrez Gene ID: 5566  
ASDInformation of known allosteric effects of PDB entries

This site has been visited times since Nov 2007.

Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓

Technical Support锛堟妧鏈敮鎸侊級: