Browse entries in the PDBbind-CN Database

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Related entries of code: 6c5k
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4m7jRCSB PDB    PDBbind219aa, >4M7J_1|Chain... *
6c5jRCSB PDB    PDBbind218aa, >6C5J_1|Chain... at 96%
6c5hRCSB PDB    PDBbind218aa, >6C5H_1|Chain... at 96%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
6c5jRCSB PDB    PDBbindPSBP
6c5hRCSB PDB    PDBbindPSBP

Entry Information
PDB ID6c5k
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameS25-23 Fab
Ligand NamePSBP
EC.Number E.C.-.-.-.-
Resolution 1.75(Å)
Affinity (Kd/Ki/IC50)Kd=68.5nM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) Biochemistry Vol. 58: pp. 714-726
Ligand Properties
Formula C36H66N2O36P2
Molecular Weight 1164.850
Exact Mass 1164.290
No. of atoms 142
No. of bonds 146
Polar Surface Area 680.26
LOGP Value -15.78      (Computed with XLOGP3)
-14.53      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 15
No. of Hydrogen Bond Acceptors: 25
No. of Rotatable Bonds: 31
No. of Nitrogen and Oxygen Atoms: 38
No. of Rings: 5
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q99LC4  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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