Browse entries in the PDBbind-CN Database

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Related entries of code: 6cvf
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4wopRCSB PDB    PDBbind225aa, >4WOP_1|Chains... at 99%
6cveRCSB PDB    PDBbind235aa, >6CVE_1|Chains... *
6cvvRCSB PDB    PDBbind235aa, >6CVV_1|Chains... at 100%
6czbRCSB PDB    PDBbind235aa, >6CZB_1|Chains... at 100%
6czcRCSB PDB    PDBbind235aa, >6CZC_1|Chains... at 100%
6czdRCSB PDB    PDBbind235aa, >6CZD_1|Chains... at 100%
6czeRCSB PDB    PDBbind235aa, >6CZE_1|Chains... at 100%
6e05RCSB PDB    PDBbind235aa, >6E05_1|Chains... at 100%
6e06RCSB PDB    PDBbind235aa, >6E06_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5cstRCSB PDB    PDBbindCDP
5jptRCSB PDB    PDBbindCDP
Entry Information
PDB ID6cvf
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameATP-dependent dethiobiotin synthetase BioD
Ligand NameCDP
EC.Number E.C.6.3.3.3
Resolution 2.3(Å)
Affinity (Kd/Ki/IC50)Kd=0.45uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Acs Catalysis Vol. 8(11): pp. 10774-10783
Ligand Properties
Formula C9H22N3O11P2
Molecular Weight 410.232
Exact Mass 410.073
No. of atoms 47
No. of bonds 48
Polar Surface Area 256.46
LOGP Value -7.87      (Computed with XLOGP3)
-3.97      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 8
No. of Rotatable Bonds: 7
No. of Nitrogen and Oxygen Atoms: 14
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P9WPQ5  
Entrez Gene IDNCBI Entrez Gene ID: 886338  
ASDInformation of known allosteric effects of PDB entries
 
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