Browse entries in the PDBbind-CN Database

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Related entries of code: 6cyi
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4nh9RCSB PDB    PDBbind273aa, >4NH9_1|Chain... *
6d28RCSB PDB    PDBbind273aa, >6D28_1|Chain... at 99%
6d1xRCSB PDB    PDBbind273aa, >6D1X_1|Chain... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
6cygRCSB PDB    PDBbindN5O

Entry Information
PDB ID6cyi
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameEndoplasmin
Ligand NameN5O
EC.Number E.C.-.-.-.-
Resolution 1.76(Å)
Affinity (Kd/Ki/IC50)Kd=9.1uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) J.Biol.Chem. Vol. 294: pp. 16010-16019
Ligand Properties
Formula C12H16N6O5
Molecular Weight 324.293
Exact Mass 324.118
No. of atoms 39
No. of bonds 41
Polar Surface Area 168.64
LOGP Value -2.59      (Computed with XLOGP3)
-1.89      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 5
No. of Hydrogen Bond Acceptors: 7
No. of Rotatable Bonds: 8
No. of Nitrogen and Oxygen Atoms: 11
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P41148  
Entrez Gene IDNCBI Entrez Gene ID: 404019  
ASDInformation of known allosteric effects of PDB entries

 
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