Browse entries in the PDBbind-CN Database

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Related entries of code: 6d8v
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
No similar entries are found!
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1sw1RCSB PDB    PDBbindPBE
2b4mRCSB PDB    PDBbindPBE

Entry Information
PDB ID6d8v
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameProbable chemoreceptor (Methyl-accepting chemotaxis) transmembrane protein
Ligand NamePBE
EC.Number E.C.-.-.-.-
Resolution 2.8(Å)
Affinity (Kd/Ki/IC50)Kd=3.8uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Biochem. J. Vol. 475: pp. 3949-3962
Ligand Properties
Formula C7H14NO2
Molecular Weight 144.192
Exact Mass 144.102
No. of atoms 24
No. of bonds 24
Polar Surface Area 37.3
LOGP Value 1.28      (Computed with XLOGP3)
0.27      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 0
No. of Nitrogen and Oxygen Atoms: 3
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q92SH9  
Entrez Gene IDNCBI Entrez Gene ID: 61601895  
ASDInformation of known allosteric effects of PDB entries

 
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