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Related entries of code: 6egs
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5ndfRCSB PDB    PDBbind571aa, >5NDF_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
6ejiRCSB PDB    PDBbindUD2

Entry Information
PDB ID6egs
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NamePolypeptide N-acetylgalactosaminyltransferase 2
Ligand NameUD2
EC.Number E.C.2.4.1.41
Resolution 2.7(Å)
Affinity (Kd/Ki/IC50)Kd=260uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Chemistry Vol. 24: pp. 8382-8392
Ligand Properties
Formula C17H29N3O17P2
Molecular Weight 609.370
Exact Mass 609.097
No. of atoms 68
No. of bonds 70
Polar Surface Area 339.36
LOGP Value -6.80      (Computed with XLOGP3)
-5.14      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 7
No. of Hydrogen Bond Acceptors: 12
No. of Rotatable Bonds: 16
No. of Nitrogen and Oxygen Atoms: 20
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q10471  
Entrez Gene IDNCBI Entrez Gene ID: 2590  
ASDInformation of known allosteric effects of PDB entries

 
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