Browse entries in the PDBbind-CN Database

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Related entries of code: 6gl8
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2o22RCSB PDB    PDBbind164aa, >2O22_1|Chain... at 94%
2w3lRCSB PDB    PDBbind144aa, >2W3L_1|Chains... at 99%
4aq3RCSB PDB    PDBbind169aa, >4AQ3_1|Chains... at 90%
4iehRCSB PDB    PDBbind169aa, >4IEH_1|Chain... at 91%
4lvtRCSB PDB    PDBbind166aa, >4LVT_1|Chains... at 93%
4lxdRCSB PDB    PDBbind166aa, >4LXD_1|Chain... at 93%
4manRCSB PDB    PDBbind166aa, >4MAN_1|Chains... at 93%
6o0pRCSB PDB    PDBbind166aa, >6O0P_1|Chain... at 92%
6o0oRCSB PDB    PDBbind166aa, >6O0O_1|Chains... at 92%
6o0mRCSB PDB    PDBbind166aa, >6O0M_1|Chain... at 92%
6o0kRCSB PDB    PDBbind166aa, >6O0K_1|Chain... at 93%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
6o0oRCSB PDB    PDBbindF3Q
Entry Information
PDB ID6gl8
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameB-cell Lymphoma 2
Ligand NameF3Q
EC.Number E.C.-.-.-.-
Resolution 1.4(Å)
Affinity (Kd/Ki/IC50)Kd=2.47nM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Oncotarget Vol. 9: pp. 20075-20088
Ligand Properties
Formula C43H43N4O6
Molecular Weight 711.825
Exact Mass 711.318
No. of atoms 96
No. of bonds 104
Polar Surface Area 97.91
LOGP Value 5.79      (Computed with XLOGP3)
6.89      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 10
No. of Nitrogen and Oxygen Atoms: 10
No. of Rings: 9
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P10415  
Entrez Gene IDNCBI Entrez Gene ID: 596  
ASDInformation of known allosteric effects of PDB entries
 
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