Browse entries in the PDBbind-CN Database

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Related entries of code: 6goo
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
6gnmRCSB PDB    PDBbind135aa, >6GNM_1|Chains... *
6gnpRCSB PDB    PDBbind135aa, >6GNP_1|Chains... at 100%
6gnrRCSB PDB    PDBbind135aa, >6GNR_1|Chains... at 100%
6gnwRCSB PDB    PDBbind135aa, >6GNW_1|Chains... at 100%
6gonRCSB PDB    PDBbind135aa, >6GON_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5jidRCSB PDB    PDBbind8PF
6gonRCSB PDB    PDBbind8PF
Entry Information
PDB ID6goo
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameTransthyretin(TTR)
Ligand Name8PF
EC.Number E.C.-.-.-.-
Resolution 1.8(Å)
Affinity (Kd/Ki/IC50)Kd=2.16uM
Release Year2018
Protein/NA SequenceCheck fasta file
Primary Reference (2018) Environ. Sci. Technol. Vol. 52: pp. 11865 - 11874
Ligand Properties
Formula C8HF15O2
Molecular Weight 414.068
Exact Mass 413.974
No. of atoms 26
No. of bonds 25
Polar Surface Area 37.3
LOGP Value 5.82      (Computed with XLOGP3)
4.45      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 2
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9PTT3  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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