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Related entries of code: 6ppy
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2wqpRCSB PDB    PDBbind349aa, >2WQP_1|Chain... at 99%
4ipiRCSB PDB    PDBbind351aa, >4IPI_1|Chain... *
4ipjRCSB PDB    PDBbind351aa, >4IPJ_1|Chain... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID6ppy
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameNeuB, an N-acetylneuraminate synthase from Neisseria meningitidis
Ligand NameOVY
EC.Number E.C.2.5.1.56
Resolution 2(Å)
Affinity (Kd/Ki/IC50)Ki=36uM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) Biochemistry Vol. 58: pp. 4236-4245
Ligand Properties
Formula C11H20N2O9
Molecular Weight 324.285
Exact Mass 324.117
No. of atoms 42
No. of bonds 41
Polar Surface Area 200.14
LOGP Value -2.48      (Computed with XLOGP3)
-3.38      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 7
No. of Hydrogen Bond Acceptors: 9
No. of Rotatable Bonds: 15
No. of Nitrogen and Oxygen Atoms: 11
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): H2VFG5  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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