Browse entries in the PDBbind-CN Database

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Related entries of code: 1db1
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1ie9RCSB PDB    PDBbind259aa, >1IE9_1|Chain... at 90%
5gicRCSB PDB    PDBbind250aa, >5GIC_1|Chain... at 100%
5gidRCSB PDB    PDBbind249aa, >5GID_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1ie9RCSB PDB    PDBbindVDX

Entry Information
PDB ID1db1
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namevitamin d nuclear receptor
Ligand NameVDX
EC.Number E.C.-.-.-.-
Resolution 1.8(Å)
Affinity (Kd/Ki/IC50)Kd=0.55nM
Release Year2000
Protein/NA SequenceCheck fasta file
Primary Reference Mol.Cell v5 pp. 173-9, 2000
Ligand Properties
Formula C27H44O3
Molecular Weight 416.636
Exact Mass 416.329
No. of atoms 74
No. of bonds 76
Polar Surface Area 60.69
LOGP Value 5.07      (Computed with XLOGP3)
5.70      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 9
No. of Nitrogen and Oxygen Atoms: 3
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P11473  
Entrez Gene IDNCBI Entrez Gene ID: 7421  
ASDInformation of known allosteric effects of PDB entries

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