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Related entries of code: 2x5o
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2jfhRCSB PDB    PDBbind445aa, >2JFH_1|Chain... *
2uuoRCSB PDB    PDBbind445aa, >2UUO_1|Chain... at 100%
2uupRCSB PDB    PDBbind445aa, >2UUP_1|Chain... at 100%
2vtdRCSB PDB    PDBbind445aa, >2VTD_1|Chain... at 100%
2vteRCSB PDB    PDBbind445aa, >2VTE_1|Chain... at 100%
2xpcRCSB PDB    PDBbind439aa, >2XPC_1|Chain... at 100%
2y1oRCSB PDB    PDBbind445aa, >2Y1O_1|Chain... at 100%
2y67RCSB PDB    PDBbind445aa, >2Y67_1|Chain... at 100%
2y68RCSB PDB    PDBbind445aa, >2Y68_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID2x5o
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameMurD,UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase
Ligand NameVSV
EC.Number E.C.6.3.2.9
Resolution 1.46(Å)
Affinity (Kd/Ki/IC50)IC50=85uM
Release Year2010
Protein/NA SequenceCheck fasta file
Primary Reference J. Med. Chem., 53, 6584-6594
Ligand Properties
Formula C23H21N3O7S
Molecular Weight 483.494
Exact Mass 483.110
No. of atoms 55
No. of bonds 57
Polar Surface Area 187.2
LOGP Value 4.76      (Computed with XLOGP3)
3.46      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 7
No. of Rotatable Bonds: 9
No. of Nitrogen and Oxygen Atoms: 10
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P14900  
Entrez Gene IDNCBI Entrez Gene ID: 944818  
ASDInformation of known allosteric effects of PDB entries

 
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