Browse entries in the PDBbind-CN Database

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Related entries of code: 3c0z
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3c10RCSB PDB    PDBbind423aa, >3C10_1|Chains... at 100%
3znrRCSB PDB    PDBbind423aa, >3ZNR_1|Chains... at 100%
3znsRCSB PDB    PDBbind423aa, >3ZNS_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1t69RCSB PDB    PDBbindSHH
1zz1RCSB PDB    PDBbindSHH
4lxzRCSB PDB    PDBbindSHH
5eeiRCSB PDB    PDBbindSHH

Entry Information
PDB ID3c0z
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameHistone deacetylase 7a
Ligand NameSHH
EC.Number E.C.-.-.-.-
Resolution 2.1(Å)
Affinity (Kd/Ki/IC50)IC50=113uM
Release Year2008
Protein/NA SequenceCheck fasta file
Primary Reference (2008) J.Biol.Chem. Vol. 283: pp. 11355-11363
Ligand Properties
Formula C5H11NO2
Molecular Weight 117.146
Exact Mass 117.079
No. of atoms 19
No. of bonds 18
Polar Surface Area 49.33
LOGP Value 0.42      (Computed with XLOGP3)
1.07      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 3
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q8WUI4  
Entrez Gene IDNCBI Entrez Gene ID: 51564  
ASDInformation of known allosteric effects of PDB entries

 
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