Browse entries in the PDBbind-CN Database

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Related entries of code: 5eei
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5eekRCSB PDB    PDBbind364aa, >5EEK_1|Chain... at 100%
5eenRCSB PDB    PDBbind364aa, >5EEN_1|Chains... at 100%
5ef7RCSB PDB    PDBbind364aa, >5EF7_1|Chains... at 100%
5ef8RCSB PDB    PDBbind364aa, >5EF8_1|Chains... at 100%
5efbRCSB PDB    PDBbind364aa, >5EFB_1|Chain... at 100%
5efhRCSB PDB    PDBbind364aa, >5EFH_1|Chains... at 100%
5efjRCSB PDB    PDBbind364aa, >5EFJ_1|Chain... at 100%
6cgpRCSB PDB    PDBbind364aa, >6CGP_1|Chain... at 100%
6cspRCSB PDB    PDBbind364aa, >6CSP_1|Chains... at 100%
6csqRCSB PDB    PDBbind364aa, >6CSQ_1|Chains... at 100%
6csrRCSB PDB    PDBbind364aa, >6CSR_1|Chains... at 100%
6cssRCSB PDB    PDBbind364aa, >6CSS_1|Chains... at 100%
6dvlRCSB PDB    PDBbind364aa, >6DVL_1|Chains... at 100%
6dvmRCSB PDB    PDBbind364aa, >6DVM_1|Chains... at 100%
6dvnRCSB PDB    PDBbind364aa, >6DVN_1|Chains... at 100%
6dvoRCSB PDB    PDBbind364aa, >6DVO_1|Chain... at 100%
6mr5RCSB PDB    PDBbind364aa, >6MR5_1|Chains... at 100%
6r0kRCSB PDB    PDBbind359aa, >6R0K_1|Chain... at 100%
6cw8RCSB PDB    PDBbind364aa, >6CW8_1|Chains... at 100%
5w5kRCSB PDB    PDBbind364aa, >5W5K_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1t69RCSB PDB    PDBbindSHH
1zz1RCSB PDB    PDBbindSHH
3c0zRCSB PDB    PDBbindSHH
4lxzRCSB PDB    PDBbindSHH
Entry Information
PDB ID5eei
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameDanio rerio (zebrafish) histone deacetylase 6 catalytic domain 2, HDAC6 (zCD2)
Ligand NameSHH
EC.Number E.C.3.5.1.98
Resolution 1.32(Å)
Affinity (Kd/Ki/IC50)Ki=0.6nM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Nat.Chem.Biol. Vol. 12: pp. 741-747
Ligand Properties
Formula C14H20N2O3
Molecular Weight 264.320
Exact Mass 264.147
No. of atoms 39
No. of bonds 39
Polar Surface Area 78.43
LOGP Value 1.59      (Computed with XLOGP3)
2.94      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 11
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): F8W4B7  
Entrez Gene IDNCBI Entrez Gene ID: 565482  
ASDInformation of known allosteric effects of PDB entries
 
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