Browse entries in the PDBbind-CN Database

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Related entries of code: 3ked
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2zxgRCSB PDB    PDBbind870aa, >2ZXG_1|Chain... at 100%
4q4eRCSB PDB    PDBbind891aa, >4Q4E_1|Chain... at 100%
4q4iRCSB PDB    PDBbind891aa, >4Q4I_1|Chain... at 100%
5mfrRCSB PDB    PDBbind891aa, >5MFR_1|Chain... at 100%
5mfsRCSB PDB    PDBbind891aa, >5MFS_1|Chain... at 100%
5mftRCSB PDB    PDBbind891aa, >5MFT_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID3ked
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameAminopeptidase N,ePepN
Ligand NameDAB
EC.Number E.C.3.4.11.2
Resolution 2.3(Å)
Affinity (Kd/Ki/IC50)IC50=3.6mM
Release Year2010
Protein/NA SequenceCheck fasta file
Primary Reference (2011) Chemmedchem Vol. 6: pp. 1971-1976
Ligand Properties
Formula C4H12N2O2
Molecular Weight 120.150
Exact Mass 120.090
No. of atoms 20
No. of bonds 19
Polar Surface Area 92.58
LOGP Value -3.06      (Computed with XLOGP3)
-2.69      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 4
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P04825  
Entrez Gene IDNCBI Entrez Gene ID: 947253  
ASDInformation of known allosteric effects of PDB entries

 
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