Browse entries in the PDBbind-CN Database

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Related entries of code: 3o4k
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3ng4RCSB PDB    PDBbind171aa, >3NG4_1|Chains... *
3nw3RCSB PDB    PDBbind171aa, >3NW3_1|Chains... at 100%
3ogxRCSB PDB    PDBbind171aa, >3OGX_1|Chains... at 100%
3rt4RCSB PDB    PDBbind171aa, >3RT4_1|Chains... at 100%
3t2vRCSB PDB    PDBbind171aa, >3T2V_1|Chains... at 100%
3uilRCSB PDB    PDBbind171aa, >3UIL_1|Chains... at 100%
3umqRCSB PDB    PDBbind171aa, >3UMQ_1|Chains... at 100%
3usxRCSB PDB    PDBbind171aa, >3USX_1|Chains... at 100%
4fnnRCSB PDB    PDBbind171aa, >4FNN_1|Chains... at 100%
5e0aRCSB PDB    PDBbind171aa, >5E0A_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID3o4k
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NamePeptidoglycan recognition protein 1
Ligand NameLTC
EC.Number E.C.-.-.-.-
Resolution 2.11(Å)
Affinity (Kd/Ki/IC50)Kd=24nM
Release Year2010
Protein/NA SequenceCheck fasta file
Primary Reference (2011) J.Biol.Chem. Vol. 286: pp. 16208-16217
Ligand Properties
Formula C39H73N2O13
Molecular Weight 778.003
Exact Mass 777.511
No. of atoms 127
No. of bonds 128
Polar Surface Area 227.18
LOGP Value 5.68      (Computed with XLOGP3)
2.96      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 6
No. of Hydrogen Bond Acceptors: 7
No. of Rotatable Bonds: 35
No. of Nitrogen and Oxygen Atoms: 15
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9GK12  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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