Browse entries in the PDBbind-CN Database

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Related entries of code: 3ogx
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3ng4RCSB PDB    PDBbind171aa, >3NG4_1|Chains... *
3nw3RCSB PDB    PDBbind171aa, >3NW3_1|Chains... at 100%
3o4kRCSB PDB    PDBbind171aa, >3O4K_1|Chains... at 100%
3rt4RCSB PDB    PDBbind171aa, >3RT4_1|Chains... at 100%
3t2vRCSB PDB    PDBbind171aa, >3T2V_1|Chains... at 100%
3uilRCSB PDB    PDBbind171aa, >3UIL_1|Chains... at 100%
3umqRCSB PDB    PDBbind171aa, >3UMQ_1|Chains... at 100%
3usxRCSB PDB    PDBbind171aa, >3USX_1|Chains... at 100%
4fnnRCSB PDB    PDBbind171aa, >4FNN_1|Chains... at 100%
5e0aRCSB PDB    PDBbind171aa, >5E0A_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID3ogx
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NamePeptidoglycan recognition protein 1
Ligand NameH1S
EC.Number E.C.-.-.-.-
Resolution 2.8(Å)
Affinity (Kd/Ki/IC50)Kd=0.33uM
Release Year2010
Protein/NA SequenceCheck fasta file
Primary Reference (2012) Int J Biochem Mol Biol Vol. 3: pp. 86-94
Ligand Properties
Formula C12H25NO19S3
Molecular Weight 583.517
Exact Mass 583.018
No. of atoms 60
No. of bonds 61
Polar Surface Area 414.14
LOGP Value -4.16      (Computed with XLOGP3)
-0.70      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 14
No. of Rotatable Bonds: 9
No. of Nitrogen and Oxygen Atoms: 20
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9GK12  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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