Browse entries in the PDBbind-CN Database

Display Options: Structure:  

Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 3uhm
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2vesRCSB PDB    PDBbind299aa, >2VES_1|Chains... at 99%
3u1yRCSB PDB    PDBbind299aa, >3U1Y_1|Chains... at 99%
4j3dRCSB PDB    PDBbind297aa, >4J3D_1|Chains... at 99%
4lchRCSB PDB    PDBbind299aa, >4LCH_1|Chain... at 99%
4okgRCSB PDB    PDBbind299aa, >4OKG_1|Chains... at 99%
5drqRCSB PDB    PDBbind299aa, >5DRQ_1|Chain... at 99%
5drrRCSB PDB    PDBbind299aa, >5DRR_1|Chain... at 99%
5u3bRCSB PDB    PDBbind299aa, >5U3B_1|Chains... at 99%
6mooRCSB PDB    PDBbind305aa, >6MOO_1|Chain... *
6modRCSB PDB    PDBbind304aa, >6MOD_1|Chain... at 98%
6mo5RCSB PDB    PDBbind304aa, >6MO5_1|Chain... at 98%
6mo4RCSB PDB    PDBbind303aa, >6MO4_1|Chain... at 98%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID3uhm
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameUDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase, LpxC
Ligand NameRFN
EC.Number E.C.3.5.1.-
Resolution 1.26(Å)
Affinity (Kd/Ki/IC50)IC50=3.6nM
Release Year2012
Protein/NA SequenceCheck fasta file
Primary Reference (2012) J.Med.Chem. Vol. 55: pp. 1662-1670
Ligand Properties
Formula C17H22N2O5S
Molecular Weight 366.432
Exact Mass 366.125
No. of atoms 47
No. of bonds 48
Polar Surface Area 112.16
LOGP Value 0.04      (Computed with XLOGP3)
2.41      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 8
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P47205  
Entrez Gene IDNCBI Entrez Gene ID: 881292  
ASDInformation of known allosteric effects of PDB entries

This site has been visited times since Nov 2007.

Copyright ©2007-2023    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓

Technical Support锛堟妧鏈敮鎸侊級: