Browse entries in the PDBbind-CN Database

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Related entries of code: 6mod
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2vesRCSB PDB    PDBbind299aa, >2VES_1|Chains... at 99%
3u1yRCSB PDB    PDBbind299aa, >3U1Y_1|Chains... at 99%
3uhmRCSB PDB    PDBbind299aa, >3UHM_1|Chain... at 99%
4j3dRCSB PDB    PDBbind297aa, >4J3D_1|Chains... at 99%
4lchRCSB PDB    PDBbind299aa, >4LCH_1|Chain... at 99%
4okgRCSB PDB    PDBbind299aa, >4OKG_1|Chains... at 99%
5drqRCSB PDB    PDBbind299aa, >5DRQ_1|Chain... at 99%
5drrRCSB PDB    PDBbind299aa, >5DRR_1|Chain... at 99%
5u3bRCSB PDB    PDBbind299aa, >5U3B_1|Chains... at 99%
6mooRCSB PDB    PDBbind305aa, >6MOO_1|Chain... *
6mo5RCSB PDB    PDBbind304aa, >6MO5_1|Chain... at 98%
6mo4RCSB PDB    PDBbind303aa, >6MO4_1|Chain... at 98%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
6mooRCSB PDB    PDBbindJWV

Entry Information
PDB ID6mod
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameLpxC
Ligand NameJWV
EC.Number E.C.-.-.-.-
Resolution 1.85(Å)
Affinity (Kd/Ki/IC50)IC50=0.71nM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) Chemmedchem Vol. 14: pp. 1560-1572
Ligand Properties
Formula C19H20N2O7S
Molecular Weight 420.436
Exact Mass 420.099
No. of atoms 49
No. of bonds 50
Polar Surface Area 150.41
LOGP Value -0.66      (Computed with XLOGP3)
0.70      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 11
No. of Nitrogen and Oxygen Atoms: 9
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P47205  
Entrez Gene IDNCBI Entrez Gene ID: 881292  
ASDInformation of known allosteric effects of PDB entries

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