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Related entries of code: 3vid
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1y6aRCSB PDB    PDBbind366aa, >1Y6A_1|Chain... at 100%
1y6bRCSB PDB    PDBbind366aa, >1Y6B_1|Chain... at 100%
3vheRCSB PDB    PDBbind359aa, >3VHE_1|Chain... at 100%
3vhkRCSB PDB    PDBbind368aa, >3VHK_1|Chain... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID3vid
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameVascular endothelial growth factor receptor 2, VEGFR2 kinase domain
Ligand Name4TT
EC.Number E.C.
Resolution 2.3(Å)
Affinity (Kd/Ki/IC50)IC50=620nM
Release Year2012
Protein/NA SequenceCheck fasta file
Primary Reference (2012) ACS MED.CHEM.LETT. Vol. 3: pp. 342-346
Ligand Properties
Formula C14H13N3
Molecular Weight 223.273
Exact Mass 223.111
No. of atoms 30
No. of bonds 33
Polar Surface Area 44.47
LOGP Value 2.88      (Computed with XLOGP3)
3.05      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 1
No. of Rotatable Bonds: 0
No. of Nitrogen and Oxygen Atoms: 3
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P35968  
Entrez Gene IDNCBI Entrez Gene ID: 3791  
ASDInformation of known allosteric effects of PDB entries

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