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Related entries of code: 3w07
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1km3RCSB PDB    PDBbind247aa, >1KM3_1|Chain... at 99%
1lolRCSB PDB    PDBbind229aa, >1LOL_1|Chains... at 99%
1loqRCSB PDB    PDBbind228aa, >1LOQ_1|Chain... at 98%
1lorRCSB PDB    PDBbind228aa, >1LOR_1|Chain... at 98%
1losRCSB PDB    PDBbind224aa, >1LOS_1|Chains... at 98%
1x1zRCSB PDB    PDBbind252aa, >1X1Z_1|Chains... *
2zz1RCSB PDB    PDBbind252aa, >2ZZ1_1|Chains... at 100%
2zz2RCSB PDB    PDBbind252aa, >2ZZ2_1|Chains... at 99%
2zz6RCSB PDB    PDBbind252aa, >2ZZ6_1|Chains... at 100%
3g1dRCSB PDB    PDBbind228aa, >3G1D_1|Chains... at 99%
3g1vRCSB PDB    PDBbind228aa, >3G1V_1|Chains... at 98%
3wjwRCSB PDB    PDBbind252aa, >3WJW_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1xz8RCSB PDB    PDBbindU5P
2j4kRCSB PDB    PDBbindU5P
2qafRCSB PDB    PDBbindU5P
2qcdRCSB PDB    PDBbindU5P
2qcnRCSB PDB    PDBbindU5P
2za3RCSB PDB    PDBbindU5P
3barRCSB PDB    PDBbindU5P
3dxgRCSB PDB    PDBbindU5P
3ex3RCSB PDB    PDBbindU5P
3ex6RCSB PDB    PDBbindU5P
4g0pRCSB PDB    PDBbindU5P
5km3RCSB PDB    PDBbindU5P
Entry Information
PDB ID3w07
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameOrotidine 5'-phosphate decarboxylase
Ligand NameU5P
EC.Number E.C.4.1.1.23
Resolution 1.03(Å)
Affinity (Kd/Ki/IC50)Kd=0.42mM
Release Year2013
Protein/NA SequenceCheck fasta file
Primary Reference (2013) J.Biol.Chem. Vol. 288: pp. 9011-9016
Ligand Properties
Formula C9H14N2O9P
Molecular Weight 325.189
Exact Mass 325.044
No. of atoms 35
No. of bonds 36
Polar Surface Area 188.06
LOGP Value -4.11      (Computed with XLOGP3)
-3.17      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 7
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 11
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O26232  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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