Browse entries in the PDBbind-CN Database

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Related entries of code: 4g0p
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4g0qRCSB PDB    PDBbind147aa, >4G0Q_1|Chain... at 100%
4g0yRCSB PDB    PDBbind147aa, >4G0Y_1|Chain... at 100%
4g0zRCSB PDB    PDBbind147aa, >4G0Z_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1xz8RCSB PDB    PDBbindU5P
2j4kRCSB PDB    PDBbindU5P
2qafRCSB PDB    PDBbindU5P
2qcdRCSB PDB    PDBbindU5P
2qcnRCSB PDB    PDBbindU5P
2za3RCSB PDB    PDBbindU5P
3barRCSB PDB    PDBbindU5P
3dxgRCSB PDB    PDBbindU5P
3ex3RCSB PDB    PDBbindU5P
3ex6RCSB PDB    PDBbindU5P
3w07RCSB PDB    PDBbindU5P
5km3RCSB PDB    PDBbindU5P

Entry Information
PDB ID4g0p
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameProtein argonaute 1
Ligand NameU5P
EC.Number E.C.-.-.-.-
Resolution 1.8(Å)
Affinity (Kd/Ki/IC50)Kd=0.98mM
Release Year2012
Protein/NA SequenceCheck fasta file
Primary Reference (2012) Embo J. Vol. 31: pp. 3588-3595
Ligand Properties
Formula C9H16N2O9P
Molecular Weight 327.205
Exact Mass 327.059
No. of atoms 37
No. of bonds 38
Polar Surface Area 182.61
LOGP Value -4.28      (Computed with XLOGP3)
-2.69      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 7
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 11
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O04379  
Entrez Gene IDNCBI Entrez Gene ID: 841262  
ASDInformation of known allosteric effects of PDB entries

 
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