Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 4bkt
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3zrcRCSB PDB    PDBbind97aa, >3ZRC_2|Chains... *
3ztcRCSB PDB    PDBbind97aa, >3ZTC_2|Chains... at 100%
3ztdRCSB PDB    PDBbind97aa, >3ZTD_2|Chains... at 100%
4awjRCSB PDB    PDBbind97aa, >4AWJ_2|Chains... at 100%
4b95RCSB PDB    PDBbind97aa, >4B95_2|Chains... at 100%
4b9kRCSB PDB    PDBbind97aa, >4B9K_4|Chain... at 100%
4bksRCSB PDB    PDBbind97aa, >4BKS_2|Chains... at 100%
4jghRCSB PDB    PDBbind96aa, >4JGH_3|Chain... at 98%
4w9cRCSB PDB    PDBbind97aa, >4W9C_2|Chains... at 100%
4w9dRCSB PDB    PDBbind97aa, >4W9D_2|Chains... at 100%
4w9eRCSB PDB    PDBbind97aa, >4W9E_2|Chains... at 100%
4w9fRCSB PDB    PDBbind97aa, >4W9F_2|Chains... at 100%
4w9gRCSB PDB    PDBbind97aa, >4W9G_2|Chains... at 100%
4w9hRCSB PDB    PDBbind97aa, >4W9H_2|Chains... at 100%
4w9iRCSB PDB    PDBbind97aa, >4W9I_2|Chains... at 100%
4w9jRCSB PDB    PDBbind97aa, >4W9J_2|Chains... at 100%
4w9kRCSB PDB    PDBbind97aa, >4W9K_2|Chains... at 100%
4w9lRCSB PDB    PDBbind97aa, >4W9L_2|Chains... at 100%
5lliRCSB PDB    PDBbind97aa, >5LLI_2|Chains... at 100%
5n4wRCSB PDB    PDBbind97aa, >5N4W_5|Chain... at 100%
5nvvRCSB PDB    PDBbind97aa, >5NVV_2|Chains... at 100%
5nvwRCSB PDB    PDBbind97aa, >5NVW_2|Chains... at 100%
5nvxRCSB PDB    PDBbind97aa, >5NVX_2|Chains... at 100%
5nvyRCSB PDB    PDBbind97aa, >5NVY_2|Chains... at 100%
5nvzRCSB PDB    PDBbind97aa, >5NVZ_2|Chains... at 100%
5nw0RCSB PDB    PDBbind97aa, >5NW0_2|Chains... at 100%
5nw1RCSB PDB    PDBbind97aa, >5NW1_2|Chains... at 100%
5nw2RCSB PDB    PDBbind97aa, >5NW2_2|Chains... at 100%
5t35RCSB PDB    PDBbind97aa, >5T35_3|Chains... at 100%
6fmiRCSB PDB    PDBbind97aa, >6FMI_2|Chains... at 100%
6fmjRCSB PDB    PDBbind97aa, >6FMJ_2|Chains... at 100%
6fmkRCSB PDB    PDBbind97aa, >6FMK_2|Chains... at 100%
6gfyRCSB PDB    PDBbind97aa, >6GFY_2|Chains... at 100%
6gfzRCSB PDB    PDBbind97aa, >6GFZ_2|Chains... at 100%
6gmqRCSB PDB    PDBbind97aa, >6GMQ_4|Chains... at 100%
6gmxRCSB PDB    PDBbind97aa, >6GMX_2|Chains... at 100%
6hr2RCSB PDB    PDBbind97aa, >6HR2_3|Chains... at 100%
6hayRCSB PDB    PDBbind97aa, >6HAY_3|Chains... at 100%
6haxRCSB PDB    PDBbind97aa, >6HAX_3|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID4bkt
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameTRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 1/2 & VON HIPPEL-LINDAU DISEASE TUMOR SUPPRESSOR
Ligand NameQD0
EC.Number E.C.-.-.-.-
Resolution 2.35(Å)
Affinity (Kd/Ki/IC50)Kd=240uM
Release Year2013
Protein/NA SequenceCheck fasta file
Primary Reference (2014) Acs Med.Chem.Lett. Vol. 5: pp. 23-28
Ligand Properties
Formula C12H17N3O4
Molecular Weight 267.281
Exact Mass 267.122
No. of atoms 36
No. of bonds 37
Polar Surface Area 95.67
LOGP Value -0.91      (Computed with XLOGP3)
-0.44      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P40337  Q15369  Q15370  
Entrez Gene IDNCBI Entrez Gene ID: 7428  6921  6923  
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com