Browse entries in the PDBbind-CN Database

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Related entries of code: 4pb2
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4pb1RCSB PDB    PDBbind424aa, >4PB1_1|Chain... *
4pd5RCSB PDB    PDBbind424aa, >4PD5_1|Chain... at 100%
4pd6RCSB PDB    PDBbind424aa, >4PD6_1|Chain... at 100%
4pd7RCSB PDB    PDBbind424aa, >4PD7_1|Chain... at 99%
4pd8RCSB PDB    PDBbind424aa, >4PD8_1|Chain... at 100%
4pd9RCSB PDB    PDBbind424aa, >4PD9_1|Chain... at 100%
4pdaRCSB PDB    PDBbind424aa, >4PDA_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID4pb2
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameNupC family protein CNT-7C8C
Ligand Name5UD
EC.Number E.C.-.-.-.-
Resolution 2.3(Å)
Affinity (Kd/Ki/IC50)Kd=16uM
Release Year2014
Protein/NA SequenceCheck fasta file
Primary Reference (2014) Elife Vol. 3: pp. e03604-e03604
Ligand Properties
Formula C9H11FN2O6
Molecular Weight 262.192
Exact Mass 262.060
No. of atoms 29
No. of bonds 30
Polar Surface Area 124.78
LOGP Value -1.99      (Computed with XLOGP3)
-2.71      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 8
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9KPL5  
Entrez Gene IDNCBI Entrez Gene ID: 57740963  
ASDInformation of known allosteric effects of PDB entries

 
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