Browse entries in the PDBbind-CN Database

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Related entries of code: 4pd5
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4pb1RCSB PDB    PDBbind424aa, >4PB1_1|Chain... *
4pb2RCSB PDB    PDBbind424aa, >4PB2_1|Chain... at 100%
4pd6RCSB PDB    PDBbind424aa, >4PD6_1|Chain... at 100%
4pd7RCSB PDB    PDBbind424aa, >4PD7_1|Chain... at 99%
4pd8RCSB PDB    PDBbind424aa, >4PD8_1|Chain... at 100%
4pd9RCSB PDB    PDBbind424aa, >4PD9_1|Chain... at 100%
4pdaRCSB PDB    PDBbind424aa, >4PDA_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
2vppRCSB PDB    PDBbindGEO

Entry Information
PDB ID4pd5
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameNupC family protein CNT-7C8C
Ligand NameGEO
EC.Number E.C.-.-.-.-
Resolution 2.91(Å)
Affinity (Kd/Ki/IC50)Kd=1370uM
Release Year2014
Protein/NA SequenceCheck fasta file
Primary Reference (2014) Elife Vol. 3. e03604: pp.1-19
Ligand Properties
Formula C9H11F2N3O4
Molecular Weight 263.198
Exact Mass 263.072
No. of atoms 29
No. of bonds 30
Polar Surface Area 111.33
LOGP Value -0.93      (Computed with XLOGP3)
-1.36      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9KPL5  
Entrez Gene IDNCBI Entrez Gene ID: 57740963  
ASDInformation of known allosteric effects of PDB entries

 
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