Browse entries in the PDBbind-CN Database

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Related entries of code: 4ynb
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3nm6RCSB PDB    PDBbind230aa, >3NM6_1|Chain... at 99%
4ffsRCSB PDB    PDBbind239aa, >4FFS_1|Chain... at 98%
4wknRCSB PDB    PDBbind245aa, >4WKN_1|Chain... *
4wkoRCSB PDB    PDBbind245aa, >4WKO_1|Chain... at 100%
4wkpRCSB PDB    PDBbind245aa, >4WKP_1|Chains... at 100%
4yo8RCSB PDB    PDBbind245aa, >4YO8_1|Chains... at 100%
6dyyRCSB PDB    PDBbind245aa, >6DYY_1|Chains... at 100%
6dywRCSB PDB    PDBbind245aa, >6DYW_1|Chains... at 100%
6dyvRCSB PDB    PDBbind245aa, >6DYV_1|Chains... at 100%
6dyuRCSB PDB    PDBbind245aa, >6DYU_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
6aytRCSB PDB    PDBbind4EH
Entry Information
PDB ID4ynb
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameHelicobacter pylori 5'-methylthioadenosine/S-adenosyl homocysteine nucleosidase (MTAN)
Ligand Name4EH
EC.Number E.C.3.2.2.20
Resolution 2(Å)
Affinity (Kd/Ki/IC50)Ki=0.043nM
Release Year2015
Protein/NA SequenceCheck fasta file
Primary Reference (2015) J.Am.Chem.Soc. Vol. 137: pp. 14275-14280
Ligand Properties
Formula C16H20N7OS
Molecular Weight 358.441
Exact Mass 358.145
No. of atoms 45
No. of bonds 48
Polar Surface Area 143.34
LOGP Value -0.28      (Computed with XLOGP3)
1.65      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 8
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9ZMY2  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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