Browse entries in the PDBbind-CN Database

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Related entries of code: 5eyk
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2vgoRCSB PDB    PDBbind44aa, >2VGO_2|Chains... at 100%
2vgpRCSB PDB    PDBbind43aa, >2VGP_2|Chains... at 100%
2vrxRCSB PDB    PDBbind43aa, >2VRX_2|Chains... at 100%
3ztxRCSB PDB    PDBbind44aa, >3ZTX_2|Chains... at 100%
4c2vRCSB PDB    PDBbind44aa, >4C2V_2|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5eymRCSB PDB    PDBbind5U5

Entry Information
PDB ID5eyk
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameX. laevis Aurora kinases B (AK-B)
Ligand Name5U5
EC.Number E.C.2.7.11.1
Resolution 1.93(Å)
Affinity (Kd/Ki/IC50)IC50=3nM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Mol.Cancer Ther. Vol. 15: pp. 1-28
Ligand Properties
Formula C29H29N4O2
Molecular Weight 465.566
Exact Mass 465.229
No. of atoms 64
No. of bonds 67
Polar Surface Area 74.67
LOGP Value 4.30      (Computed with XLOGP3)
3.35      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 8
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O13024  Q6DE08  
Entrez Gene IDNCBI Entrez Gene ID: 398105  398457  
ASDInformation of known allosteric effects of PDB entries

 
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