Browse entries in the PDBbind-CN Database

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Related entries of code: 5g17
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1zz1RCSB PDB    PDBbind369aa, >1ZZ1_1|Chains... at 99%
1zz3RCSB PDB    PDBbind369aa, >1ZZ3_1|Chains... at 99%
2gh6RCSB PDB    PDBbind369aa, >2GH6_1|Chains... at 99%
2vcgRCSB PDB    PDBbind375aa, >2VCG_1|Chains... *
5g1aRCSB PDB    PDBbind371aa, >5G1A_1|Chains... at 100%
5g1cRCSB PDB    PDBbind370aa, >5G1C_1|Chains... at 100%
5g3wRCSB PDB    PDBbind374aa, >5G3W_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5g10RCSB PDB    PDBbind6DK

Entry Information
PDB ID5g17
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein Namehistone deacetylase
Ligand Name6DK
EC.Number E.C.-.-.-.-
Resolution 1.51(Å)
Affinity (Kd/Ki/IC50)Kd=0.2uM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) Biochim. Biophys. Acta Vol. 1861: pp. 1855-1863
Ligand Properties
Formula C15H20F3NO3
Molecular Weight 319.319
Exact Mass 319.140
No. of atoms 42
No. of bonds 42
Polar Surface Area 69.56
LOGP Value 2.91      (Computed with XLOGP3)
3.28      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 11
No. of Nitrogen and Oxygen Atoms: 4
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q70I53  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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