Browse entries in the PDBbind-CN Database

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Related entries of code: 5g1c
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1zz1RCSB PDB    PDBbind369aa, >1ZZ1_1|Chains... at 99%
1zz3RCSB PDB    PDBbind369aa, >1ZZ3_1|Chains... at 99%
2gh6RCSB PDB    PDBbind369aa, >2GH6_1|Chains... at 99%
2vcgRCSB PDB    PDBbind375aa, >2VCG_1|Chains... *
5g17RCSB PDB    PDBbind369aa, >5G17_1|Chains... at 99%
5g1aRCSB PDB    PDBbind371aa, >5G1A_1|Chains... at 100%
5g3wRCSB PDB    PDBbind374aa, >5G3W_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5li3RCSB PDB    PDBbind9RB

Entry Information
PDB ID5g1c
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameHDAC like protein from Bordetella Alcaligenes, B/A-HDAH
Ligand Name9RB
EC.Number E.C.-.-.-.-
Resolution 1.81(Å)
Affinity (Kd/Ki/IC50)IC50=0.14uM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2017) Acs Infect Dis. Vol.3 : pp. 152-161
Ligand Properties
Formula C15H17N5O2
Molecular Weight 299.328
Exact Mass 299.138
No. of atoms 39
No. of bonds 40
Polar Surface Area 91.87
LOGP Value 2.02      (Computed with XLOGP3)
3.36      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q70I53  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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