Browse entries in the PDBbind-CN Database

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Related entries of code: 5jsg
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4h75RCSB PDB    PDBbind238aa, >4H75_1|Chain... *
4mzfRCSB PDB    PDBbind224aa, >4MZF_2|Chain... at 95%
4mzhRCSB PDB    PDBbind224aa, >4MZH_1|Chain... at 95%
5jsjRCSB PDB    PDBbind222aa, >5JSJ_1|Chains... at 95%
6qplRCSB PDB    PDBbind222aa, >6QPL_1|Chain... at 96%
6i8yRCSB PDB    PDBbind222aa, >6I8Y_1|Chain... at 96%
6i8lRCSB PDB    PDBbind222aa, >6I8L_1|Chain... at 96%
6i8bRCSB PDB    PDBbind222aa, >6I8B_1|Chains... at 96%
5y5wRCSB PDB    PDBbind235aa, >5Y5W_1|Chains... at 91%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID5jsg
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameSpindlin-1
Ligand Name6P9
EC.Number E.C.-.-.-.-
Resolution 2.5(Å)
Affinity (Kd/Ki/IC50)Kd=14.2uM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) Nat. Chem. Biol. Vol. 13: pp. 750-756
Ligand Properties
Formula C36H53N5O2
Molecular Weight 587.838
Exact Mass 587.420
No. of atoms 96
No. of bonds 101
Polar Surface Area 61.53
LOGP Value 6.19      (Computed with XLOGP3)
6.36      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 12
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 6
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9Y657  
Entrez Gene IDNCBI Entrez Gene ID: 10927  
ASDInformation of known allosteric effects of PDB entries

 
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