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Related entries of code: 6qpl
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4h75RCSB PDB    PDBbind238aa, >4H75_1|Chain... *
4mzfRCSB PDB    PDBbind224aa, >4MZF_2|Chain... at 95%
4mzhRCSB PDB    PDBbind224aa, >4MZH_1|Chain... at 95%
5jsgRCSB PDB    PDBbind222aa, >5JSG_1|Chains... at 95%
5jsjRCSB PDB    PDBbind222aa, >5JSJ_1|Chains... at 95%
6i8yRCSB PDB    PDBbind222aa, >6I8Y_1|Chain... at 96%
6i8lRCSB PDB    PDBbind222aa, >6I8L_1|Chain... at 96%
6i8bRCSB PDB    PDBbind222aa, >6I8B_1|Chains... at 96%
5y5wRCSB PDB    PDBbind235aa, >5Y5W_1|Chains... at 91%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID6qpl
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameSpindlin-1
Ligand NameJC5
EC.Number E.C.-.-.-.-
Resolution 1.6(Å)
Affinity (Kd/Ki/IC50)Kd=91nM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) J.Med.Chem. Vol. 62: pp. 8996-9007
Ligand Properties
Formula C20H30N3O2
Molecular Weight 344.471
Exact Mass 344.234
No. of atoms 55
No. of bonds 57
Polar Surface Area 78.18
LOGP Value 1.04      (Computed with XLOGP3)
1.12      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 0
No. of Rotatable Bonds: 8
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9Y657  
Entrez Gene IDNCBI Entrez Gene ID: 10927  
ASDInformation of known allosteric effects of PDB entries

 
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