Browse entries in the PDBbind-CN Database

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Related entries of code: 5nn5
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5nn4RCSB PDB    PDBbind872aa, >5NN4_1|Chain... *
5nn6RCSB PDB    PDBbind872aa, >5NN6_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1oimRCSB PDB    PDBbindNOJ
2j77RCSB PDB    PDBbindNOJ
2jkeRCSB PDB    PDBbindNOJ
2pwdRCSB PDB    PDBbindNOJ
3gbeRCSB PDB    PDBbindNOJ
3gxtRCSB PDB    PDBbindNOJ
4iidRCSB PDB    PDBbindNOJ
5ieeRCSB PDB    PDBbindNOJ

Entry Information
PDB ID5nn5
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameLysosomal alpha-glucosidase
Ligand NameNOJ
EC.Number E.C.-.-.-.-
Resolution 2(Å)
Affinity (Kd/Ki/IC50)Ki=3.4uM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) Nat Commun Vol. 8: pp. 1111-1111
Ligand Properties
Formula C6H14NO4
Molecular Weight 164.180
Exact Mass 164.092
No. of atoms 25
No. of bonds 25
Polar Surface Area 97.53
LOGP Value -2.35      (Computed with XLOGP3)
-2.42      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 5
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P10253  
Entrez Gene IDNCBI Entrez Gene ID: 2548  
ASDInformation of known allosteric effects of PDB entries

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