Browse entries in the PDBbind-CN Database

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Related entries of code: 5o4f
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3s9eRCSB PDB    PDBbind258aa, >3S9E_1|Chains... *
3u92RCSB PDB    PDBbind257aa, >3U92_1|Chains... at 99%
3u93RCSB PDB    PDBbind257aa, >3U93_1|Chains... at 99%
4e0wRCSB PDB    PDBbind258aa, >4E0W_1|Chain... at 100%
4g8nRCSB PDB    PDBbind258aa, >4G8N_1|Chain... at 100%
4igrRCSB PDB    PDBbind258aa, >4IGR_1|Chain... at 100%
4nwcRCSB PDB    PDBbind258aa, >4NWC_1|Chain... at 100%
4nwdRCSB PDB    PDBbind258aa, >4NWD_1|Chain... at 100%
5nf6RCSB PDB    PDBbind258aa, >5NF6_1|Chains... at 100%
6f28RCSB PDB    PDBbind258aa, >6F28_1|Chains... at 100%
6f29RCSB PDB    PDBbind258aa, >6F29_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5nebRCSB PDB    PDBbind8VE
5nihRCSB PDB    PDBbind8VE

Entry Information
PDB ID5o4f
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameGlutamate receptor ionotropic, kainate 3
Ligand Name8VE
EC.Number E.C.-.-.-.-
Resolution 2.1(Å)
Affinity (Kd/Ki/IC50)Ki=208nM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) ACS Chem Neurosci Vol. 8: pp. 2056-2064
Ligand Properties
Formula C8H12N3O4
Molecular Weight 214.199
Exact Mass 214.083
No. of atoms 27
No. of bonds 28
Polar Surface Area 106.81
LOGP Value -1.44      (Computed with XLOGP3)
-1.67      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 0
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P42264  
Entrez Gene IDNCBI Entrez Gene ID: 298521  
ASDInformation of known allosteric effects of PDB entries

 
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