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Related entries of code: 5v5y
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1x8bRCSB PDB    PDBbind289aa, >1X8B_1|Chain... *
2in6RCSB PDB    PDBbind287aa, >2IN6_1|Chain... at 99%
2io6RCSB PDB    PDBbind287aa, >2IO6_1|Chain... at 99%
3bi6RCSB PDB    PDBbind287aa, >3BI6_1|Chain... at 99%
3bizRCSB PDB    PDBbind287aa, >3BIZ_1|Chain... at 99%
5vc3RCSB PDB    PDBbind289aa, >5VC3_1|Chain... at 99%
5vc4RCSB PDB    PDBbind289aa, >5VC4_1|Chain... at 99%
5vc5RCSB PDB    PDBbind289aa, >5VC5_1|Chain... at 99%
5vc6RCSB PDB    PDBbind289aa, >5VC6_1|Chain... at 99%
5vd2RCSB PDB    PDBbind289aa, >5VD2_1|Chain... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5vd0RCSB PDB    PDBbind8X7
5vdkRCSB PDB    PDBbind8X7

Entry Information
PDB ID5v5y
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameWee1-like protein kinase
Ligand Name8X7
EC.Number E.C.-.-.-.-
Resolution 1.9(Å)
Affinity (Kd/Ki/IC50)Kd=13.4nM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) J. Med. Chem. Vol. 60: pp. 7863-7875
Ligand Properties
Formula C27H33N8O2
Molecular Weight 501.603
Exact Mass 501.273
No. of atoms 70
No. of bonds 74
Polar Surface Area 105.54
LOGP Value 3.10      (Computed with XLOGP3)
3.18      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 8
No. of Nitrogen and Oxygen Atoms: 10
No. of Rings: 5
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P30291  
Entrez Gene IDNCBI Entrez Gene ID: 7465  
ASDInformation of known allosteric effects of PDB entries

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