Browse entries in the PDBbind-CN Database

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Related entries of code: 5vd0
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5vcvRCSB PDB    PDBbind311aa, >5VCV_1|Chain... *
5vcwRCSB PDB    PDBbind311aa, >5VCW_1|Chains... at 100%
5vcxRCSB PDB    PDBbind311aa, >5VCX_1|Chain... at 100%
5vcyRCSB PDB    PDBbind311aa, >5VCY_1|Chain... at 100%
5vczRCSB PDB    PDBbind311aa, >5VCZ_1|Chain... at 100%
5vd1RCSB PDB    PDBbind311aa, >5VD1_1|Chain... at 100%
5vd3RCSB PDB    PDBbind311aa, >5VD3_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
5v5yRCSB PDB    PDBbind8X7
5vdkRCSB PDB    PDBbind8X7

Entry Information
PDB ID5vd0
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameMembrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase
Ligand Name8X7
EC.Number E.C.-.-.-.-
Resolution 2.13(Å)
Affinity (Kd/Ki/IC50)Kd=324nM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) J. Med. Chem. Vol. 60: pp. 7863-7875
Ligand Properties
Formula C27H33N8O2
Molecular Weight 501.603
Exact Mass 501.273
No. of atoms 70
No. of bonds 74
Polar Surface Area 105.54
LOGP Value 3.10      (Computed with XLOGP3)
3.18      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 8
No. of Nitrogen and Oxygen Atoms: 10
No. of Rings: 5
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q99640  
Entrez Gene IDNCBI Entrez Gene ID: 9088  
ASDInformation of known allosteric effects of PDB entries

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