Browse entries in the PDBbind-CN Database

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Related entries of code: 5vcy
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5vcvRCSB PDB    PDBbind311aa, >5VCV_1|Chain... *
5vcwRCSB PDB    PDBbind311aa, >5VCW_1|Chains... at 100%
5vcxRCSB PDB    PDBbind311aa, >5VCX_1|Chain... at 100%
5vczRCSB PDB    PDBbind311aa, >5VCZ_1|Chain... at 100%
5vd0RCSB PDB    PDBbind311aa, >5VD0_1|Chain... at 100%
5vd1RCSB PDB    PDBbind311aa, >5VD1_1|Chain... at 100%
5vd3RCSB PDB    PDBbind311aa, >5VD3_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
3ue4RCSB PDB    PDBbindDB8
6op9RCSB PDB    PDBbindDB8
4qmnRCSB PDB    PDBbindDB8
5i9xRCSB PDB    PDBbindDB8
5vc3RCSB PDB    PDBbindDB8

Entry Information
PDB ID5vcy
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameMembrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase
Ligand NameDB8
EC.Number E.C.-.-.-.-
Resolution 1.56(Å)
Affinity (Kd/Ki/IC50)Kd=270nM
Release Year2017
Protein/NA SequenceCheck fasta file
Primary Reference (2017) J. Med. Chem. Vol. 60: pp. 7863-7875
Ligand Properties
Formula C26H31Cl2N5O3
Molecular Weight 532.462
Exact Mass 531.180
No. of atoms 67
No. of bonds 70
Polar Surface Area 85.28
LOGP Value 5.38      (Computed with XLOGP3)
5.57      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 9
No. of Nitrogen and Oxygen Atoms: 8
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q99640  
Entrez Gene IDNCBI Entrez Gene ID: 9088  
ASDInformation of known allosteric effects of PDB entries

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