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Related entries of code: 6e5l
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5ha1RCSB PDB    PDBbind140aa, >5HA1_1|Chain... *
5hbsRCSB PDB    PDBbind140aa, >5HBS_1|Chain... at 100%
6e6mRCSB PDB    PDBbind140aa, >6E6M_1|Chains... at 100%
6e5tRCSB PDB    PDBbind140aa, >6E5T_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID6e5l
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameRetinol-binding protein 1
Ligand NameHVD
EC.Number E.C.-.-.-.-
Resolution 1.17(Å)
Affinity (Kd/Ki/IC50)Ki=66.7nM
Release Year2019
Protein/NA SequenceCheck fasta file
Primary Reference (2019) Acs Chem.Biol. Vol. 14: pp. 434-448
Ligand Properties
Formula C21H30O2
Molecular Weight 314.462
Exact Mass 314.225
No. of atoms 53
No. of bonds 54
Polar Surface Area 40.46
LOGP Value 6.52      (Computed with XLOGP3)
5.85      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 8
No. of Nitrogen and Oxygen Atoms: 2
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P09455  
Entrez Gene IDNCBI Entrez Gene ID: 5947  
ASDInformation of known allosteric effects of PDB entries

 
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